| Project Number | Project Title | Main Investigator | Duration |
| 101048028 | Jean Monnet Module EGoCE - Evolution of Governance in (post)Constitutional Europe | prof. JUDr. PhDr. Ivo Šlosarčík, Ph.D., LL.M. | 2022-2024 |
| 610505 | Jean Monnet Chair TeDEUSS - Teaching and Debating EU Small states' Security | doc. Mgr. Tomáš Weiss, M.A., Ph.D. | 2019-2022 |
| 2010-2996/001-001 | Grand Debates of the European Integration | prof. PhDr. Lenka Rovná, CSc. | 2010 - 2013 |
| 2010-2997/001-001 | Rethinking Federalism for the Post Lisbon European Union | prof. PhDr. Lenka Rovná, CSc. | 2010 - 2011 |
| 06/0058 | EU Constitutionalisation (Jean Monnet Chair) | prof. PhDr. Lenka Rovná, CSc. | 2006- 2009 |
| 06/0061 | The Jean Monnet European Centre of Excellence | prof. PhDr. Lenka Rovná, CSc. | 2006- 2009 |
| 06/0056 | Legal Framework of the European Integration (Jean Monnet Chair) | prof. JUDr. PhDr. Ivo Šlosarčík, LL.M., Ph.D. | 2006- 2009 |
| 04/0092 | Challenges of the EU as a Key Actor in the Global Arena | PhDr. Lenka Škrábalová, Ph.D. | 2004- 2007 |
| C03/0115 | The European Construction - Czech Historical Reflection (European module) | PhDr. Jiří Rak | 2003- 2006 |
| C01/176 | Legal Framework of European Integration (permanent course) | prof. JUDr. PhDr. Ivo Šlosarčík, LL.M., Ph.D. | 2001- 2004 |
| CZ99/017 | EU Political Science | prof. PhDr. Lenka Rovná, CSc. | 1999- 2003 |
| CZ99/018 | Jean Monnet Centre of Excellence in European Studies | prof. PhDr. Lenka Rovná, CSc. | 1999- 2003 |
| CZ 97/005 | European integration - European Political Science | prof. PhDr. Lenka Rovná, CSc. | 1997- 2000 |
