| Project Number | Project Title | Main Investigator | Duration |
| 22-19382S | Domestic Violence in Postwar Reconstruction. The Czech Lands, 1945-53 | doc. PhDr. Ota Konrád, Ph.D. | 2022-2025 |
| 23-04833S | Specialisation in EU small states’ foreign and security policy | prof. Mgr. Tomáš Weiss, M.A., Ph.D. | 2023-2025 |
| 21-23328S | State-owned companies as actors of economic statism? The case of Russia | Mgr. Karel Svoboda, Ph.D. | 2021-2024 |
| 22-13347S | Where have all the natsmen gone? Ethnic Minorities in the Post-Soviet Space | doc. RNDr. Vincenc Kopeček, Ph.D. | 2022-2024 |
| 20-13685S | Soviet Society and the Prague Spring: Reflection of the Prague Spring and the Intervention in Czechoslovakia in Soviet Society | doc. PhDr. Luboš Švec CSc. | 2020-2022 |
| 19-11397S | Bosnian Fluxes: Everyday Entanglements of War, Postsocialism and (Neo)Liberalization in Dayton Bosnia and Herzegovina | PhDr. Ondřej Žíla, Ph.D. | 2019-2022 |
| 19-12941S | Produced by Polish comrades: Stories of Czech industrial buildings and Polish guest workers in mutual perspective | Mgr. Ondřej Klípa, Ph.D. | 2019-2022 |
| 17-05581S | Under the Pressure of Internationalization and Securitization: Changes in the Security Policies of European States | doc. Mgr. Tomáš Weiss, M.A., Ph.D. | 2017-2019 |
| 16-17670S | Identities and Practices of a Divided Actor: An Interpretation of Contemporary German Foreign Policy | JUDr. Vladimír Handl, CSc. | 2016- 2018 |
| 16-16009S | "We had to live; we had to survive somehow..." Jews in Greece, 1944–2012 | PhDr. Kateřina Králová, M.A., Ph.D. | 2016- 2018 |
| 16-10625S | The Role of Czechoslovak Railways in Czechoslovak Transportation Policy, 1970–1989 | doc. PhDr. Tomáš Nigrin, Ph.D. | 2016- 2018 |
| 15-09404S | How a Centrally Planned Economy Actually Functioned in Czechoslovakia | JUDr. Vladimír Handl, CSc. | 2015- 2017 |
| 15-09249S | De Facto States in Northern Eurasia in the Context of Russian Foreign Policy | PhDr. Slavomír Horák, Ph.D. | 2015- 2017 |
| 14-14612S | Violence in Central Europe During World War I and the Postwar Period: A Comparison of the Austrian and Czech Lands | doc. PhDr. Ota Konrád, Ph.D. | 2014- 2016 |
| 14-21581S | The Role of Collective Memory in Transatlantic Relations After the End of the Cold War | PhDr. Mgr. Kryštof Kozák, Ph.D. | 2014- 2016 |
| 14-16260S | Czechoslovakia, Central Europe, and the Post-World War II Peace Settlement with Germany | prof. PhDr. Jaroslav Kučera, CSc. | 2014- 2016 |
| P408/12/P493 | Czech Foreign Policy in the European Union | doc. Mgr. Tomáš Weiss, M.A., Ph.D. | 2012- 2014 |
| P410/10/1302 | The Current European Landscape of Contemporary History Research | prof. PhDr. Jiří Pešek, CSc. | 2010- 2012 |
| 409/09/1440 | Perestroika, the Baltic States, and Czechoslovakia, 1988–1991 | doc. PhDr. Luboš Švec, CSc. | 2009- 2011 |
| 407/08/0867 | The Transformation of the Westminster Model and the Evolution of the British State and Politics: An Assessment of 10 Years of Tony Blair’s Government and New Labour | prof. PhDr. Lenka Rovná, CSc. | 200 - 2009 |
| 409/07/0411 | Poland's Eastern Policy: Development and Structure | doc. PhDr. Jiří Vykoukal, CSc. | 2007- 2009 |
| 407/07/P091 | Political Opposition in Theory and Central European Practice: A Comparative Study of the Czech Republic and Poland | doc. PhDr. Michal Kubát, Ph.D. | 2007- 2008 |
| 409/04/2031 | Polish Historiography After 1945 (People, Institutions, Concepts) | doc. PhDr. Jiří Vykoukal, CSc. | 2004- 2006 |
| 407/03/0442 | Immigration Policy and the Integration of Immigrants in the United States Since 1965 | doc. PhDr. Miloš Calda | 2003- 2005 |
| 407/05/2125 | Political Aspects of EU Constitutional Reform: From the European Convention to the Treaty Establishing a Constitution for Europe | prof. PhDr. Lenka Rovná, CSc. | 2005 |
| 404/93/2059 | The Image of Germans and Germany in Czech Society in the 19th and 20th Centuries | prof. PhDr. Jan Křen, DrSc. | 1993- 1995 |
